Sequencing the Genomes of the First Terrestrial Fungal Lineages: What Have We Learned?
A. P. Grygansky, J. Golan, A. Muszewska, A. Idnurm, S. Dolatabadi, S. J. Mondo, V. B. Kutovenko, V. O. Kutovenko, M. T. Gajdeczka, I. M. Anishchenko, J. Pawlowska, N. V. Tran, I. Ebersberger, K. Voigt, Y. Wang, Y. Chang, T. E. Pawlowska, J. Heitman, R. Vilgalys, G. Bonito, G. L. Benny, M. E. Smith, N. Reynolds, T. Y. James, I. V. Grigoriev, J. W. Spatafora, J. E. Stajich
Microorganisms 2023, 11(7), 1830; https://doi.org/10.3390/microorganisms11071830
S. Ebersberger, C. Hipp, M. M. Mulorz, A. Buchbender, D. Hubrich, H. Kang, S. Martinez-Lumbreras, P. Kristofori, R. Sutandy, L. Llacsahuanga Allcca, J. Schönfeld, C. Bakisoglu, A. Busch, H. Hänel, K. Tretow, M. Welzel, A. Di Liddo, M. M. Möckel, K. Zarnack, I. Ebersberger, S. Legewie, K. Luck, M. Sattler, J. König
Molecular Cell (2023), https://doi.org/10.1016/j.molcel.2023.07.002
F. Sylvester, F. G. Weichert, V. L. Lozano, K. J. Groh, M. Bálint, L. Baumann, C. Bässler, W. Brack, B. Brandl, J. Curtius, P. Dierkes, P. Döll, I. Ebersberger, S. Fragkostefanakis, E. J. N. Helfrich, T. Hickler, S. Johann, J. Jourdan, S. Klimpel, H. Kminek, F. Liquin, D. Möllendorf, T. Mueller, J. Oehlmann, R. Ottermanns, S. U. Pauls, M. Piepenbring, J. Pfefferle, G. J. Schenk, J. F. Scheepens, M. Scheringer, S. Schiwy, A. Schlottmann, F. Schneider, L. M. Schulte, M. Schulze-Sylvester, E. Stelzer, F. Strobl, A. Sundermann, K. Tockner, T. Tröger, A. Vilcinskas, C. Völker, R. Winkelmann, H. Hollert
nature ecology & evolution, June 2023, https://doi.org/10.1038/s41559-023-02117-6
R. Iruegas, K. Pfefferle, S. Goettig, B. Averhoff, I. Ebersberger
PLOS Genetics, July 27, 2023, https://doi.org/10.1371/journal.pgen.1010646
ncOrtho: Efficient and reliable identification of miRNA orthologs
F. Langschied, M. Leisegang, R. Brandes, I. Ebersberger
Nucleic Acids Research, June 2023, gkad467, https://doi.org/10.1093/nar/gkad467
FAS: Assessing the similarity between proteins using multi-layered feature architectures
J. Dosch, H. Bergmann, V. Tran, I. Ebersberger
Bioinformatics, April 2023, btad226, https://doi.org/10.1093/bioinformatics/btad226
The Quest for Orthologs orthology benchmark service in 2022.
Nevers Y, Jones TEM, Jyothi D, Yates B, Ferret M, Portell-Silva L, Codo L, Cosentino S, Marcet-Houben M, Vlasova A, Poidevin L, Kress A, Hickman M, Persson E, Piližota I, Guijarro-Clarke C; OpenEBench team the Quest for Orthologs Consortium; Iwasaki W, Lecompte O, Sonnhammer E, Roos DS, Gabaldón T, Thybert D, Thomas PD, Hu Y, Emms DM, Bruford E, Capella-Gutierrez S, Martin MJ, Dessimoz C, Altenhoff A.
Nucleic Acids Res. 2022 May 12;50(W1):W623-32. doi: 10.1093/nar/gkac330
Mattonet, K.; Riemslagh, FW.; Guenther, S.; Prummel, KD.; Kesavan, G.; Hans, S.; Ebersberger, I.; Brand, M.; Burger, A.; Reischauer, S.; Mosimann, C.; Stainier, DYR.
Sci Adv. 2022 Sep 2;8(35):eabn2082. doi: 10.1126/sciadv.abn2082. Epub 2022 Aug 31.
Jackson-Litteken, CD.; Di Venanzio, G.; Le, NH.; Scott, NE.; Djahanschiri, B.; Distel, JS.; Pardue, EJ.; Ebersberger, I.; Feldman, MF.
mBio. 2022 Jun 28;13(3):e0025822. doi: 10.1128/mbio.00258-22. Epub 2022 May 31.
Djahanschiri, B.; Di Venanzio, G.; Distel, J.S.; Breisch, J.;
Dieckmann, M. A.; Goesmann, A.; Averhoff, B.; Göttig, S.; Wilharm, G.; Feldman,
M.F.; Ebersberger, I.;
PLOS Genetics 2022
doi: https://doi.org/10.1101/2022.01.10.475602
Assembly and Functional Role of PACE Transporter PA2880 from
Pseudomonas aeruginosa
Zhao, J.; Hellwig, N.; Djahanschiri, B.; Khera R.; Morgner N.;
Ebersberger, I.; Wang , J.; Michel, H.
Microbiol Spectr 2022 Apr 4;e0145321. doi:
10.1128/spectrum.01453-21
Zhao, J.; Xie, H.; Mehdipour, A. R.; Safarian, S.; Ermler, U.; Münke, C.; Thielmann, C.; Hummer, G.; Ebersberger, I.; Wang, J.; Michel, H.
PNAS November 16, 2021 118 (46) e2107335118; https://doi.org/10.1073/pnas.2107335118
Birikmen, M.; Bohnsack, K. E.; Tran, V.; Somayaji, S.; Bohnsack,
M. T.; Ebersberger, I.
Front. Microbiol., 16 September 2021 |
https://doi.org/10.3389/fmicb.2021.739000
Ten years of collaborative progress in the Quest for Ortholog
Linard, B.; Ebersberger, I.; McGlynn, S. E.; Glover, N.; Mochizuki, T.; Patricio, M.; Lecompte, O.; Nevers, Y.; QFO Consortium; Thomas, P.D.; Gabaldón, T.; Sonnhammer, E.; Dessimoz, C.; Uchiyama, I.
Molecular Biology and Evolution 2021, msab098, https://doi.org/10.1093/molbev/msab098
Minimized combinatorial CRISPR screens identify genetic interactions in autophagy
Diehl, V.; Wegner, M.; Grumati, P.; Husnjak, K.; Schaubeck, S.; Gubas, A.; Jayeshkumar Shah, V.; Polat, I. H.; Langschied, F.; Prieto-Garcia, C.; Müller, K.; Kalousi, A.; Ebersberger, I.; Brandts, C. H.; Dikic, I.; Kaulich, M.
Nucleic Acids Research, Volume 49, Issue 10, 4 June 2021, Pages 5684–5704, https://doi.org/10.1093/nar/gkab309
Bacterial and Fungal Toll-Like Receptor Activation Elicits Type I IFN Responses in Mast Cells
Kornstädt, L.; Pierre, S.; Weigert, A.; Ebersberger, S.; Schäufele, T. J.; Kolbinger, A.; Schmid, T.; Cohnen, J.; Thomas, D.; Ferreirós, N.; Brüne, B.; Ebersberger, I., Scholich, K.
Front. Immunol. 2021, https://doi.org/10.3389/fimmu.2020.607048
Negroni, M. A.; Segers, F. H. I. D.; Vogelweith, F.; Foitzik, S.
BMC Genomics volume 21, Article number: 816 (2020)
https://doi.org/10.1186/s12864-020-07191-9
Peptidoglycanediting provides immunity to Acinetobacter baumannii during bacterial warfare
Nguyen, H. L.; Peters, K.; Espaillat, A.; Sheldon, J. R.; Gray, J.; Di Venanzio, G.; Lopez, J.; Djahanschiri, B.; Mueller, E. A.; Hennon, S. W.; Levin, P.-A.; Ebersberger, I.; Skaar, E. P.; Cava, F.; Vollmer, W.; Feldman M. F.;
Sci Adv . 2020 Jul 22;6(30):eabb5614. doi: 10.1126/sciadv.abb5614. eCollection 2020 Jul.
Tek/Tie2 is not required for cardiovascular development in zebrafish
Jiang, Z.; Carlantoni, C.; Allanki, S.; Ebersberger, I.; Stainier, D. Y. R. ;
Development 2020 : dev.193029 doi: 10.1242/dev.193029 Published 14 September 2020
Kotrade, P.; Werner, A.; Ebersberger, I.; Brüggemann, W.;
Plant Gene Volume 23, September 2020, https://doi.org/10.1016/j.plgene.2020.100232
Adjustment of photosynthetic activity to drought and fluctuating light in wheat
Grieco, M.; Roustan, R.; Dermendjiev, G.; Rantala, S.;Jain, J.; Leonardelli, M.; Neumann, K.; Berger, V.; Engelmeier, D.; Bachmann, B.; Ebersberger, I.; Aro, E.-M.; Weckwerth, W.; Teige, M.;
Plant Cell Environ. 2020;1–17; https://doi.org/10.1111/pce.13756
What is in Umbilicaria pustulata? A metagenomic approach to reconstruct the holo-genome of a lichen
Greshake Tzovaras, B.; Segers, F.; Bicker, A.; Dal Grande, F.; Otte, J.; Yahya Anvar, S.; Hankeln, T.; Schmitt, I.; Ebersberger, I.;
Genome Biology and Evolution 2020, eva0049, https://doi.org/10.1093/gbe/evaa049
Hildebrandt, A.; Brüggemann, M.; Rücklé, C.; Boerner, S.; Heidelberger, J. B.; Busch, A.; Hänel, H.; Voigt, A.; Möckel, M. M.; Ebersberger, S.; Scholz, A.; Dold, A.; Schmid, T.; Ebersberger, I.; Roignant, J.Y.; Zarnack, K.; König, J.; Beli, P.
Genome Biology volume 20, Article number: 216 (2019)
Advances and Applications in the Quest for Orthologs.
Glover N.; Dessimoz C.; Ebersberger I.; Forslund SK.; Gabaldón T.; Huerta-Cepas J.; Martin MJ.; Muffato M.; Patricio M.; Pereira C.; Sousa da Silva A.; Wang Y.; Sonnhammer E.; Thomas PD.; Quest for Orthologs Consortium.
Mol Biol Evol. 2019 Oct 1;36(10):2157-2164. doi: 10.1093/molbev/msz150.#
Tietgen, M.; Kramer, JS.; Brunst, S.; Djahanschiri, B.; Wohra, S.; Higgins, PG.; Weidensdorfer, M.; Riedel-Christ, S.; Pos, KM.; Gonzaga, A.; Steglich, M.; Nübel, U.; Ebersberger, I.; Proschak, E.; Göttig, S.
J Antimicrob Chemother. 2019 Jun 1;74(6):1494-1502. doi: 10.1093/jac/dkz080.
Frank, AC.; Ebersberger, S.; Fink, AF.; Lampe, S.; Weigert, A.; Schmid, T.; Ebersberger, I.; Syed, SN.; Brüne, B.
Nat Commun. 2019 Mar 8;10(1):1135. doi: 10.1038/s41467-019-08989-2.
Linker, SM.; Urban, L.; Clark, SJ.; Chhatriwala, M.; Amatya, S.; McCarthy, DJ.; Ebersberger, I.; Vallier, L.; Reik, W.; Stegle, O1.;, Bonder, MJ.
Genome Biol. 2019 Feb 11;20(1):30. doi: 10.1186/s13059-019-1644-0.
Weidensdorfer, M.; Ishikawa, M.; Hori, K.; Linke, D.; Djahanschiri, B.; Iruegas, R.; Ebersberger, I.; Riedel-Christ, S.; Enders, G.; Leukert, L.; Kraiczy, P.; Rothweiler, F.; Cinatl, J.; Berger, J.; Hipp, K.; Kempf, V. A. J.; Göttig, S.
Virulence 2019, Jan, Pages 68-81, doi.org/10.1080/21505594.2018.1558693
The evolutionary traceability of a protein
Jain, A.; Persia, D.; Fliedner, F.; von Haesseler, A.; Ebersberger, I.
Genome Biol Evol. 2019 Feb 1;11(2):531-545. doi: 10.1093/gbe/evz008.
Berz, J.; Simm, S.; Schuster, S.; Scharf, K.D.; Schleiff, E.; Ebersberger, I.
Bioinform Biol Insights. 2019 Jan 7;13:1177932218821365. doi: 10.1177/1177932218821365. eCollection 2019.
Gupta, S.; Jain, A.; Syed, S. N. .; Snodgrass, R. G.; Pflüger-Müller, B.; Leisegang, M. S. .; Weigert, A.; Brandes, R. P. .; Ebersberger, .I; Brüne, B.; Namgaladze, D.
OncoImmunology 2018, 7:10 , doi.org/10.1080/2162402X.2018.1494110
Blaschke, U.; Suwono, B.; Zafari, S.; Ebersberger, I.; Skiebe, E.; Jeffries, C. M.; Svergun, D.I.; Wilharm, G.
Protein Expr Purif. 2018 Nov;151:78-85. doi: 10.1016/j.pep.2018.06.009. Epub 2018 Jun 22.
PhyloProfile: Dynamic visualization and exploration of multi-layered phylogenetic profiles
Tran, N. V; Greshake Tzovaras, B; Ebersberger, I;
Bioinformatics. 2018 Sep 1;34(17):3041-3043. doi: 10.1093/bioinformatics/bty225.
Studying AMPK in an Evolutionary Context.
Jain, A.; Roustan, V.; Weckwerth, W.; Ebersberger, I.;
Methods Mol Biol. 2018;1732:111-142. doi: 10.1007/978-1-4939-7598-3_8.
Moretti, A. I. S.; Pavanelli, J. C.; Nolasco, P.; Leisegang, M. S.; Tanaka, L. Y.; Fernandes, C. G.; Wosniak Jr, J.; Kajihara, D.; Dias, M. H.; Fernandes, D. C.; Jo, H.; Tran, N. V.; Ebersberger, I.; Brandes, R. P.; Bonatto, D.; Laurindo, F. R. M.
Scientific Reports 2017 Dec 8;7(1):17262. doi: 10.1038/s41598-017-16947-5.
Gearing up to handle the mosaic nature of life in the quest for orthologs
Forslund, K.; Pereira, C.; Capella-Gutierrez, S.; Sousa da Silva, A.; Altenhoff, A.; Huerta-Cepas, J.; Muffato, M.; Patricio, M.; Vandepoele, K.; Ebersberger, I.; Blake, J.; Breis, J.T.F.
The Quest for Orthologs Consortium: Boeckmann, B.; Gabaldón, T.; Sonnhammer, E.; Dessimoz, C.; Lewis, S.
Bioinformatics. 2018 Jan 15;34(2):323-329. doi: 10.1093/bioinformatics/btx542.
Natural product diversity associated with the nematode symbionts Photorhabdus and Xenorhabdus
Tobias, N.; Wolff, H.; Djahanschiri, B.; Grundmann, F.; Kronenwerth, M.; Shi, Y.; Simonyi, S.; Grün, P.; Shapiro-Ilan, D.; Pidot, S.; Stinear, T.; Ebersberger, I.; Bode, H.
Nat Microbiol. 2017 Dec;2(12):1676-1685. doi: 10.1038/s41564-017-0039-9. Epub 2017 Oct 9.
Liu, H.; Chen, C.; Gao, Z.; Min, J.; Gu, Y.; Jian, J.; Jiang, X.; Cai, H.; Ebersberger, I.; Xu, M.; Zhang, X.; Chen, J.; Luo, W.; Chen, B.; Chen, J.; Liu, H.; Li, J.; Lai, R.; Bai, M.; Wei, J.; Yi, S.; Wang, H.; Cao, X.; Zhou, X.; Zhao, Y.; Wei, K.; Yang, R.; Liu, B.; Zhao, S.; Fang, X.; Schartl, M.; Qian, X.; Wang, W.
Gigascience. 2017 Jul 1;6(7):1-13. doi: 10.1093/gigascience/gix039.
An annotated draft genome for Radix auricularia (Gastropoda, Mollusca)
Schell, T.; Feldmeyer, B.; Schmidt, H.; Greshake, B.; Tills, O.; Truebano, M.; Rundle, SD.; Paule, J.; Ebersberger, I.; Pfenninger, M.;
Genome Biology and Evolution, Volume 9, Issue 3, March 2017, Pages 585–592, https://doi.org/10.1093/gbe/evx032
Lutsak, T.; Fernández-Mendoza, F.; Greshake, B.; Dal Grande, F.; Ebersberger, I.; Ott, S.; Printzen, C.
Appl Plant Sci. 2016 Sep 19;4(9). pii: apps.1600047. doi: 10.3732/apps.1600047.
An evolutionary perspective of AMPK-TOR signaling in the three domains of life
Roustan, V.; Jain, A.; Teige, M.; Ebersberger, I.; Weckwerth, W.;
Exp Bot. 2016 Jun;67(13):3897-907. doi: 10.1093/jxb/erw211
Ruge, R.; Flosdorff, S.; Ebersberger, I.; Chigri, F.; Vothknecht, U.;
J Exp Bot. 2016 Jun;67(13):3985-96. doi: 10.1093/jxb/erw101. Epub 2016 Mar 29.
Grieco M.; Jain, A.; Ebersberger, I.; Teige, M.;
J Exp Bot. 2016 Jun;67(13):3883-96. doi: 10.1093/jxb/erw164. Epub 2016 Apr 25. Review.
Acinetobacter equi sp. nov. isolated from horse faeces
Poppel, M.T.; Skiebe, E.; Laue, M.; Bergmann, H.; Ebersberger, I.; Garn, T.; Fruth, A.; Baumgardt, S.; Busse, H.J.; Wilharm, G.;
Int J Syst Evol Microbiol. 2015 Nov 30. doi: 10.1099/ijsem.0.000806
Acinetobacter baumannii Virulence Is Mediated by the Concerted Action of Three Phospholipases D
Stahl, J.; Bergmann, H.; Göttig, S.; Ebersberger, I.; Averhoff, B.;
PLoS One. 2015; 10(9): e0138360
Potential and pitfalls of eukaryotic metagenome skimming: A test case for lichens.
Greshake, B.; Zehr, S.; Dal Grande, F.; Meiser, A.; Schmitt, I.; Ebersberger, I.;
Mol Ecol Resour. 2015 Sep 8. doi: 10.1111/1755-0998.12463
Sloan, K. E.; Leisegang, M. S.; Doebele, C.; Ramírez, A. S.; Simm, S.; Safferthal, C.; Kretschmer, J.; Schorge, T.; Markoutsa, S.; Haag, S.; Karas, M.; Ebersberger, I.; Schleiff, E.; Watkins, N. J.; T. Bohnsack, M. T.
Nucl. Acids Res. (January 2015) 43 (1): 553-564
Feldmeyer, B.; Greshake, B.; Funke, E.; Patel, S.; Ebersberger, I.; Pfenninger, M.;
BMC Evolutionary Biology 2015, 15:164 doi:10.1186/s12862-015-0434-x
Bayer, R.G.; Köstler, T.; Jain, A.; Stael, S.; Ebersberger, I.; Teige, M.;
Mol Plant. 2014 Dec;7(12):1797-800.
A transcriptome approach to ecdysozoan phylogeny
Borner, J.; Rehm, P.; Schill, R. O.; Ebersberger, I.; Burmester, T.;
Mol Phylogenet Evol. 2014 Nov; 80:79-87
The evolution of the ribosome biogenesis pathway from a yeast perspective
Ebersberger, I.: Simm, S.; Leisegang, M. S.; Schmitzberger, P.; Mirus, O.; von Haeseler, A.; Bohnsack, M. T.; Schleiff, E.;
Nucl. Acids Res. 2014 42: 1509-1523
Transcriptome Data Reveal Syndermatan Relationships and Suggest the Evolution of Endoparasitism in Acanthocephala via an Epizoic Stage
Wey-Fabrizius, A. R.; Herlyn, H.; Rieger, B.; Rosenkranz, D.; Witek, A.; Welch, D. B. M. ; Ebersberger, I.; Hankeln, T.;
PLOS ONE February 10, 2014; DOI: 10.1371/journal.pone.0088618
Nesnidal, M. P.; Helmkampf, M.; Meyer, A.; Witek, A.; Bruchhaus, I.; Ebersberger, I.; Hankeln, T.; Lieb, B.; Struck, T.H. and Hausdorf, B.;
BMC Evolutionary Biology.2013, 13:253; DOI: 10.1186/10.1186/1471-2148-13-253
Dell'Ampio, E.; Meusemann, K.; Szucsich, N. U.; Peters, R. S.; Meyer, B.; Borner, J.; Petersen, M.; Aberer, A. J. ; Stamatakis, A.; Walzl, M. G.; Minh, B. Q.; von Haeseler, A.; Ebersberger, I.; Pass, G.; Misof, B.;
Mol Biol Evol 2013; DOI: 10.1093/molbev/mst196
Bengtsson-Palme, J., Ryberg, M.; Hartmann, M.; Branco, S.; Wang, Z.; Godhe, A.; dee Wit, P.; Sánchez-García, M.; Ebersberger, I.; de Sousa, F.; Amend, A.; Jumpponen, A.; Unterseher, M.; Kristiansson, E.; Abarenkov, K.; Bertrand, Y.; Sanli, K.; Eriksson, K. M.; Vik, U.; Veldre, V.; Nilsson, R. H.
Methods in Ecology and Evolution 2013; DOI: 10.1111/2041-210X.12073
REvolver: Modeling sequence evolution under domain constraints.
Koestler, T.; von Haeseler, A.; Ebersberger, I.;
Mol Biol Evol 2012; 29(9):2133-45
A Consistent Backbone for the Fungi.
Ebersberger, I.; de Matos Simoes, R.; Kupczok, A.; Gube, M.; Kothe, E.; Voigt, K.; von Haeseler, A.;
Mol Biol Evol 2012; 29:1319-1334.
von Reumont, BM.; Jenner, RA.; Wills, MA.; DellAmpio, E.; Pass, G.; Ebersberger, I.; Meyer, B.; Koenemann, S.; Iliffe, TM.; Stamatakis, A.; Niehuis, O.; Meusemann, K.; Misof, B.;
Mol Biol Evol 2012; 29:1031-1045
The plant heat stress transcription factor (Hsf) family: structure, function and evolution.
Scharf, KD.; Berberich, T.; Ebersberger, I. and Nover, L.;
BBA - Gene Regulatory Mechanisms. 2012; 1819(2):104-19, doi.org/10.1016/j.bbagrm.2011.10.002
Phylogenomic analyses of malaria parasites and evolution of their exported proteins.
Pick, C.; Ebersberger, I.; Spielmann, T.; Bruchhaus, I. and Burmester, T.;
BMC Evolutionary Biology. 2011; 11:167
Zygomycetes, microsporidia, and the evolutionary ancestry of sex determination.
Koestler, T.; Ebersberger, I.;
Genome Biology and Evolution. 2011; 3:186-194
FACT: Functional annotation transfer between proteins with similar feature architecture.
Koestler, T.; von Haeseler, A.; Ebersberger, I.;
BMC Bioinformatics. 2010; 11:417
A phylogenomic approach to resolve the arthropod tree of life.
Meusemann, K.; von Reumont, BM.; Simon, S.; Roeding, F.; Strauss, S.; Kück, P.; Ebersberger, I.; Walzl, M.; Pass, G.; Breuers, S.; Achter, V.; von Haeseler, A.; Burmester, T.; Hadrys, H.; Wägele, JW.; Misof, B.;
Mol Biol Evol. 2010; 27(11):2451-2464
Support for the monophyletic origin of Gnathifera from phylogenomics.
Witek, A.; Herlyn, H.; Ebersberger, I.; Mark Welch, DB.; Hankeln, T.;
Mol Phylogenet Evol. 2009; 53(3):1037-1041
HaMStR: profile hidden markov model based search for orthologs in ESTs.
Ebersberger, I.; Strauss, S.; von Haeseler, A.;
BMC Evol Biol. 2009; 9:157
Genome-wide RNAi screen identifies genes involved in intestinal pathogenic bacterial infection.
Cronin, SJ.; Nehme, NT.; Limmer, S.; Liegeois, S.; Pospisilik, JA.; Schramek, D.; Leibbrandt, A.; Simoes Rde, M.; Gruber, S.; Puc, U.; Ebersberger, I.; Zoranovic, T.; Neely, GG.; von Haeseler, A.; Ferrandon, D.; Penninger, JM.;
Science. 2009; 325(5938):340-343
Centrin4 coordinates cell and nuclear division in T. brucei.
Shi, J.; Franklin, JB.; Yelinek, JT.; Ebersberger, I.; Warren, G.; He, CY;.
J Cell Sci. 2008; 121(Pt 18):3062-3070
Rooted triple consensus and anomalous gene trees.
Ewing, GB.; Ebersberger, I.; Schmidt, HA.; von Haeseler, A.;
BMC Evol Biol. 2008; 8:118
TbG63, a golgin involved in Golgi architecture in Trypanosoma brucei.
Ramirez, IB.; de Graffenried, CL.; Ebersberger, I.; Yelinek, J.; He, CY.; Price, A.; Warren, G.;
J Cell Sci. 2008; 121(Pt 9):1538-1546
Pospisilik, JA.; Knauf, C.; Joza, N.; Benit, P.; Orthofer, M.; Cani, PD.; Ebersberger, I.; Nakashima, T.; Sarao, R.; Neely, G.; Esterbauer, H.; Kozlov, A.; Kahn, CR.; Kroemer, G.; Rustin, P.; Burcelin, R.; Penninger, JM.;
Cell. 2007; 131(3):476-491
EST sequencing of Onychophora and phylogenomic analysis of Metazoa.
Roeding, F.; Hagner-Holler, S.; Ruhberg, H.; Ebersberger, I.; von Haeseler, A.; Kube, M.; Reinhardt, R.; Burmester, T.;
Mol Phylogenet Evol. 2007; 45(3):942-951
Mapping human genetic ancestry.
Ebersberger, I.; Galgoczy, P.; Taudien, S.; Taenzer, S.; Platzer, M.; von Haeseler, A.;
Mol Biol Evol. 2007; 24(10):2266-2276
Multiplex amplification of the mammoth mitochondrial genome and the evolution of Elephantidae.
Krause, J.; Dear, PH.; Pollack, JL.; Slatkin, M.; Spriggs, H.; Barnes, I.; Lister, AM.; Ebersberger, I.; Pääbo, S.; Hofreiter, M.;
Nature. 2006; 439(7077):724-727
Should the draft chimpanzee sequence be finished?
Taudien, S.; Ebersberger, I.; Glöckner, G.; Platzer, M.;
Trends Genet. 2006; 22(3):122-125; doi.org/10.1016/j.tig.2005.12.007
Cracks in the shell–zooming in on eggshell formation in the human parasite Schistosoma mansoni.
Ebersberger, I.; Knobloch, J.; Kunz, W.;
Dev Genes Evol. 2005; 215(5):261-267
Ebersberger, I.; Meyer, M.;
Mol Biol Evol. 2005; 22(5):1240-1245
A neutral explanation for the correlation of diversity with recombination rates in humans.
Hellmann, I.; Ebersberger, I.; Ptak, SE.; Płłbo, S.; Przeworski, M.;
Am J Hum Genet. 2003 Jun;72(6):1527-1535
Selection on human genes as revealed by comparisons to chimpanzee cDNA.
Hellmann, I.; Zollner, S.; Enard, W.; Ebersberger, I.; Nickel, B.; Paabo, S.;
Genome Res. 2003; 13(5):831-837
Genomewide comparison of DNA sequences between humans and chimpanzees.
Ebersberger, I.; Metzler, D.; Schwarz, C.; Pääbo, S.;
Am J Hum Genet. 2002; 70(6):1490-1497
A variable intron distribution in globin genes of Chironomus: evidence for recent intron gain.
Hankeln, T.; Friedl, H.; Ebersberger, I.; Martin, J.; Schmidt, ER.;
Gene. 1997; 205(1-2):151-160
Goethe-University Frankfurt/Main
Department for Applied Bioinformatics
Institute for Cell Biology and Neuroscience
Prof. Dr. Ingo Ebersberger
Max-von-Laue Str. 13
D-60438 Frankfurt
GERMANY
Phone +49 69 798 - 42112
Secretary
Anne Hänel
Campus Riedberg
Biologicum; Room 3.205
Phone +49 69 798-42110
Mail haenel@bio.uni-frankfurt.de